Here is a list of upgrades you can earn through the Warp Hole or the PokeMart.
 | Arrival | Gives you the chance to catch Jirachi | -
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 | Ball Upgrade | Upgrades your ball. Pokeball -> Great Ball -> Ultra Ball -> Master Ball | 40 coins
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 | Big | Adds a large bonus to your score (1,000,000 to 9,000,000) | -
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 | Catch 'Em | Instantly enables Catch 'Em Mode | -
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 | Challenge | (Ruby) Whiscash takes you to the Spheal/Sealeo Bonus Stage | 60 coins
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 | Challenge | (Sapphire) Pelipper takes you to the Spheal/Sealeo Bonus Stage | 60 coins
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 | Coin +10 | Gives you ten extra coins | -
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 | Coin +30 | Gives you thirty extra coins | -
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 | Coin +50 | Gives you fifty extra coins | -
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 | Evo | Instantly enables Evo Mode | -
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 | Extra Ball | Gives you an extra ball | 99 coins
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 | Max Upgrade | Upgrades your ball to a Master Ball | -
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 | Bonus Multiplier | Multiplies your next Bonus Score by this number | -
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 | Pikachu and Pichu | Pikachu and Pichu will save your ball if it goes into the outer lanes | 50 coins
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 | 30 Second Saver | Your ball is automatically reloaded for no penalty in the duration that this lasts | 10 coins
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 | 60 Second Saver | Your ball is automatically reloaded for no penalty in the duration that this lasts | 20 coins
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 | 90 Second Saver | Your ball is automatically reloaded for no penalty in the duration that this lasts | 30 coins
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 | Small | Adds a small bonus to your score (100 to 900) | -
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 | 30 Second Timer Bonus | 30 seconds is added to the next timer | 40 coins |